Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-5-Internal Loop pdb1p9xF0.n1692-1728
Source: [PDB-id:chain] 1p9x:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.40 ANGSTROMS.
Position (1698, 1722), (1704, 1714)
Primary structure ('_': anchors) _GACGUAU_-_GCCAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 8 9 ↑
2 10 11 ↑
3 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 3 Bifurcated/O2' ?
2 1 16 Watson-Crick/Watson-Crick cis y
3 3 15 O2'/Bifurcated ?
4 5 14 Watson-Crick/Watson-Crick trans y
5 8 11 O2'/Bifurcated trans y
6 8 12 Watson-Crick/O2' ?
7 9 10 Watson-Crick/Watson-Crick cis
8 10 11 Bifurcated/O2' ?
9 12 16 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters