Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb1p9x10.i538-566
Source: [PDB-id:chain] 1p9x:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (538, 566)
Primary structure ('_': anchors) _GAGCUUAAGUUGAAAAACGGAGGCGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 26 →
3 4 5 ↑
4 7 8 ↑
5 7 22 →
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
9 11 12 ↑
10 17 18 ↑
11 18 19 ↑
12 19 20 ↑
13 22 23 ↑
14 23 24 ↑
15 24 25 ↑
16 26 27 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 23 Watson-Crick/Watson-Crick cis
2 6 22 Hoogsteen/Watson-Crick trans y
3 7 20 Watson-Crick/O2' ?
4 8 20 O2'/Bifurcated trans
5 9 19 Watson-Crick/Watson-Crick cis y
6 11 17 Watson-Crick/Watson-Crick cis y
7 11 18 Watson-Crick/Watson-Crick cis y
8 12 16 Watson-Crick/Sugar trans y
9 12 17 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters