Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'18-Segment pdb1p9x10.i433-452
Source: [PDB-id:chain] 1p9x:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (433, 452)
Primary structure ('_': anchors) _AGUGAAAGAGAACCUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 6 7 ↑
6 7 10 ↑
7 8 10 ↓
8 8 11 ↑
9 15 16 ↑
10 18 19 ↑
11 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 8 Hoogsteen/Watson-Crick trans
2 5 7 O2'/Sugar ?
3 5 8 O2'/Bifurcated ?
4 8 11 Hoogsteen/O2' ?
5 9 10 O2'/Sugar ?
6 15 17 Watson-Crick/O2' ?
7 16 17 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters