Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb1p9x10.i1672-1692
Source: [PDB-id:chain] 1p9x:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (1672, 1692)
Primary structure ('_': anchors) _ACUGUUUACCAAAAUCACA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 5 18 →
3 6 7 ↑
4 8 12 &larr
5 16 17 ↑
6 17 18 ↑
7 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 O2'/Watson-Crick ?
2 1 3 O2'/Bifurcated ?
3 3 18 Bifurcated/O2' ?
4 3 19 Sugar/Hoogsteen trans y
5 5 17 Watson-Crick/Watson-Crick cis
6 7 13 Sugar/Hoogsteen trans y
7 7 14 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters