Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1p9x10.i1003-1026
Source: [PDB-id:chain] 1p9x:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (1003, 1026)
Primary structure ('_': anchors) _UCAAAGAGUGCGUAAUAGCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
12: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 5 6
5 10 11
6 11 12
7 13 14
8 13 19
9 15 16
10 16 17
11 19 20
12 20 21
13 23 24
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Hoogsteen/O2' ?
2 3 5 O2'/Hoogsteen ?
3 6 23 Watson-Crick/O2' ?
4 7 22 Watson-Crick/Watson-Crick cis
5 12 20 Watson-Crick/Watson-Crick cis y
6 13 18 Hoogsteen/Sugar trans y
7 14 15 Hoogsteen/O2' ?
8 14 16 O2'/Hoogsteen ?
9 14 17 O2'/Watson-Crick ?
10 18 19 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters