Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Segment pdb1p6v1B.i25-30
Source: [PDB-id:chain] 1p6v:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB
Source: Compound 45-MER
Source: Resolution 3.20 ANGSTROMS.
Position (25, 30)
Primary structure ('_': anchors) _GACG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C4'-exo, 4: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 4 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters