Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-Hairpin pdb1oq01A.e6-10
Source: [PDB-id:chain] 1oq0:A (&rarr PDB)
Source: Information P6.1 STEM LOOP FROM THE ACTIVATION DOMAIN OF HTR
Source: Compound P6.1 RNA HAIRPIN FROM HTR
Source: Resolution NOT APPLICABLE.
Position (6, 10)
Primary structure ('_': anchors) _UGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 2: C2'-endo, 3: C3'-exo, 4: C2'-endo, 5: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Watson-Crick/Watson-Crick cis
2 4 5 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters