Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-5-Internal Loop pdb1ondF0.n634-772
Source: [PDB-id:chain] 1ond:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.40 ANGSTROMS.
Position (635, 771), (641, 762)
Primary structure ('_': anchors) _AGAUAGCU_-_CGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
3 5 15 &larr
4 6 7
5 11 12
6 13 14 &larr
7 15 16
8 16 17
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Watson-Crick/Watson-Crick cis y
3 3 4 Bifurcated/O2' ?
4 3 15 Watson-Crick/Watson-Crick cis
5 7 13 Watson-Crick/Watson-Crick cis y
6 10 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters