Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Segment pdb1ond10.i1616-1632
Source: [PDB-id:chain] 1ond:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (1616, 1632)
Primary structure ('_': anchors) _GAACUUUGCAAUCUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		9: C4'-exo, 16: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6 ↑
2 7 8 ↑
3 11 12 ↑
4 12 13 ↑
5 13 14 ↑
6 14 15 ↑
7 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Sugar/Hoogsteen cis y
2 2 4 Bifurcated/O2' ?
3 3 4 Sugar/O2' ?
4 5 9 O2'/Bifurcated ?
5 6 8 O2'/Hoogsteen ?
6 6 9 O2'/Watson-Crick ?
7 9 12 Watson-Crick/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters