Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1ond10.e1400-1410
Source: [PDB-id:chain] 1ond:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.40 ANGSTROMS.
Position (1400, 1410)
Primary structure ('_': anchors) _UAUGGCUAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 4: C4'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 6
2 6 7
3 9 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 4 6 Hoogsteen/O2' ?
3 4 7 Bifurcated/O2' ?
4 7 9 Hoogsteen/O2' ?
5 9 10 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters