Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1oln1C.e15-23
Source: [PDB-id:chain] 1oln:C (&rarr PDB)
Source: Information MODEL FOR THIOSTREPTON ANTIBIOTIC BINDING TO L11 SUBSTRATE FROM 50S RIBOSOMAL RNA
Source: Compound RNA
Source: Resolution NOT APPLICABLE.
Position (15, 23)
Primary structure ('_': anchors) _UAGAAGC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 5
4 5 9
5 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 O2'/Watson-Crick ?
2 1 9 Watson-Crick/Watson-Crick cis y
3 2 4 O2'/Hoogsteen ?
4 2 5 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters