Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-1-Internal Loop pdb1o15FA.n11-20
Source: [PDB-id:chain] 1o15:A (&rarr PDB)
Source: Information THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS
Source: Compound THEOPHYLLINE-BINDING RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (9, 25), (11, 20)
Primary structure ('_': anchors) _CCUU_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: O4'-endo, 3: C2'-endo, 4: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 8
2 5 6
3 7 8
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters