Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1o15FA.n1-33
Source: [PDB-id:chain] 1o15:A (&rarr PDB)
Source: Information THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS
Source: Compound THEOPHYLLINE-BINDING RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (4, 30), (8, 26)
Primary structure ('_': anchors) _CAG_-_AUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-endo, 7: C2'-endo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 8 9
4 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/Watson-Crick cis
3 3 8 Watson-Crick/Watson-Crick cis y
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters