Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1nwyF0.n1146-1194
Source: [PDB-id:chain] 1nwy:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
Source: Compound 23S RIBOSOMAL RRNA
FLIPPED INTERNAL
Source: Resolution 3.30 ANGSTROMS.
Position (1148, 1192), (1154, 1186)
Primary structure ('_': anchors) _CGACU_-_AGUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 13
2 2 3
3 3 4
4 4 5
5 5 6
6 9 10
7 10 11
8 11 12
9 12 13
10 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 12 Watson-Crick/Watson-Crick cis
3 5 10 Watson-Crick/Watson-Crick cis
4 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters