Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1nwy10.e1827-1837
Source: [PDB-id:chain] 1nwy:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN
Source: Compound 23S RIBOSOMAL RRNA
Source: Resolution 3.30 ANGSTROMS.
Position (1827, 1837)
Primary structure ('_': anchors) _UAACUAUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 5 6
4 6 7
5 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/Watson-Crick cis
3 4 6 O2'/Hoogsteen ?
4 4 7 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters