Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-3-Internal Loop pdb1nwxF0.n1354-1545
Source: [PDB-id:chain] 1nwx:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (1360, 1539), (1364, 1532)
Primary structure ('_': anchors) _GUUGAA_-_GGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 7 8 ↑
4 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Hoogsteen/Sugar trans y
3 3 4 Hoogsteen/O2' ?
4 4 5 Sugar/O2' ?
5 4 10 O2'/Bifurcated ?
6 4 12 O2'/Watson-Crick ?
7 7 9 O2'/Bifurcated ?
8 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters