Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-2-2-8-Multiloop pdb1nwx10.m538-1208
Source: [PDB-id:chain] 1nwx:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (543, 1203), (548, 631), (634, 772), (775, 1143), (1146, 1194)
Primary structure ('_': anchors) _GACU_-_GA_-_UU_-_CG_-_GUGCGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 23 &larr
3 5 6 ↑
4 7 9 &larr
5 8 9 ↑
6 11 12 ↑
7 14 22 ↓
8 16 17 ↑
9 17 18 ↑
10 17 22 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 28 Watson-Crick/Watson-Crick cis
2 2 25 O2'/Watson-Crick ?
3 2 26 Bifurcated/O2' ?
4 3 11 O2'/Watson-Crick ?
5 3 23 Watson-Crick/Hoogsteen trans y
6 5 9 O2'/Watson-Crick ?
7 6 7 Watson-Crick/Watson-Crick cis
8 10 11 Watson-Crick/Watson-Crick cis
9 12 25 Hoogsteen/O2' ?
10 14 15 Watson-Crick/Watson-Crick cis
11 16 22 Watson-Crick/Watson-Crick cis
12 17 21 O2'/Bifurcated cis y
13 18 19 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters