Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-8-12-8-8-Multiloop pdb1nwx10.m1970-2508
Source: [PDB-id:chain] 1nwx:0 (&rarr PDB)
Source: Information COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1971, 2507), (1981, 2338), (2347, 2388), (2401, 2471), (2480, 2498)
Primary structure ('_': anchors) _CGAAAAGAC_-_GAUAACAG_-_ACCUCGAUGUCG_-_UGGGUUCA_-_GGUCUCUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		38: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5 ↑
2 6 29 &larr
3 10 11 ↑
4 12 27 &larr
5 13 26 &larr
6 16 17 ↑
7 18 19 ↑
8 20 21 ↑
9 25 26 ↑
10 33 34 ↑
11 34 35 ↑
12 36 37 ↑
13 39 40 ↑
14 40 41 ↑
15 46 47 ↑
16 47 48 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 55 Watson-Crick/Watson-Crick cis
2 4 51 Watson-Crick/Watson-Crick cis
3 6 30 O2'/Bifurcated ?
4 8 27 O2'/Hoogsteen ?
5 10 16 Watson-Crick/Watson-Crick cis y
6 11 12 Watson-Crick/Watson-Crick cis y
7 19 26 Watson-Crick/Watson-Crick cis
8 19 30 Watson-Crick/Bifurcated cis y
9 21 22 Watson-Crick/Watson-Crick cis
10 33 39 Watson-Crick/Watson-Crick cis
11 35 36 Watson-Crick/Watson-Crick cis
12 38 39 Hoogsteen/O2' ?
13 38 49 O2'/Bifurcated ?
14 45 46 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters