Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1nkw10.n2733-2759
Source: [PDB-id:chain] 1nkw:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.10 ANGSTROMS.
Position (2734, 2758), (2740, 2753)
Primary structure ('_': anchors) _UGCAC_-_UCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 ↑
3 6 7 ↑
4 11 12 ↑
5 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 10 O2'/Bifurcated ?
3 4 11 Sugar/O2' ?
4 5 9 Watson-Crick/Hoogsteen trans y
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters