Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'19-Segment pdb1nkw10.i456-476
Source: [PDB-id:chain] 1nkw:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.10 ANGSTROMS.
Position (456, 476)
Primary structure ('_': anchors) _AGUGAAAGAGAACCUGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		8: C4'-exo, 18: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 6 7 ↑
5 8 10 ↓
6 15 16 ↑
7 18 19 ↑
8 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 7 O2'/Sugar ?
2 9 10 O2'/Sugar ?
3 11 12 C/O2' ?
4 15 17 Bifurcated/O2' ?
5 16 17 Watson-Crick/O2' ?
6 20 21 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters