Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1nkw10.i189-212
Source: [PDB-id:chain] 1nkw:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.10 ANGSTROMS.
Position (189, 212)
Primary structure ('_': anchors) _AGGAGAAGAAAGAGAAUUCGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 5 6 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 10 22 →
8 11 13 ↑
9 13 14 ↑
10 14 15 ↑
11 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 5 O2'/Sugar ?
2 7 24 O2'/Bifurcated ?
3 9 22 Sugar/O2' ?
4 13 20 Watson-Crick/Watson-Crick cis
5 17 19 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters