Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'20-Segment pdb1njp10.i1613-1634
Source: [PDB-id:chain] 1njp:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1613, 1634)
Primary structure ('_': anchors) _UAAGGAACUUUGCAAUCUCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 4 5 ↑
3 7 8 ↓
4 9 10 ↑
5 11 12 ↑
6 15 16 ↑
7 16 17 ↑
8 17 18 ↑
9 18 19 ↑
10 19 20 ↑
11 21 22 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 8 Bifurcated/O2' ?
2 7 8 C/O2' ?
3 10 12 O2'/Watson-Crick ?
4 10 13 O2'/Watson-Crick ?
5 19 20 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters