Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-8-Internal Loop pdb1njo10.n2407-2461
Source: [PDB-id:chain] 1njo:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A SHORT SUBSTRATE ANALOG ACCPUROMYCIN (ACCP)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.70 ANGSTROMS.
Position (2402, 2470), (2407, 2461)
Primary structure ('_': anchors) _UCGU_-_GCACGCGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 8 9
5 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Hoogsteen trans y
2 1 16 Watson-Crick/Watson-Crick cis
3 3 12 Watson-Crick/Watson-Crick cis
4 4 9 Watson-Crick/Watson-Crick cis
5 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters