Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb1njn10.n1775-1810
Source: [PDB-id:chain] 1njn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE ANTIBIOTIC SPARSOMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.70 ANGSTROMS.
Position (1777, 1808), (1786, 1799)
Primary structure ('_': anchors) _CAAGUGGA_-_GAAAUGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 18 →
4 4 5 ↑
5 6 7 ↑
6 7 13 &larr
7 8 9 ↑
8 8 14 →
9 9 10 ↑
10 11 12 ↑
11 12 13 ↑
12 14 15 ↑
13 15 16 ↑
14 18 19 ↑
15 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis y
2 3 17 O2'/Bifurcated ?
3 6 15 Watson-Crick/Watson-Crick cis
4 7 14 Hoogsteen/Sugar trans
5 10 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters