Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1njn10.i596-619
Source: [PDB-id:chain] 1njn:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH THE ANTIBIOTIC SPARSOMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.70 ANGSTROMS.
Position (596, 619)
Primary structure ('_': anchors) _GAGUCCGAAUAGGGCGGCAUUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 ↑
3 7 8 ↑
4 12 13 ↑
5 14 15 ↑
6 16 17 ↑
7 17 18 ↑
8 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 14 Watson-Crick/Watson-Crick cis
2 8 10 O2'/Bifurcated ?
3 9 10 C/O2' ?
4 10 12 Bifurcated/O2' ?
5 19 20 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters