Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-2-0-5-Multiloop pdb1njm10.m538-1208
Source: [PDB-id:chain] 1njm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM) AND THE ANTIBIOTIC SPARSOMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.60 ANGSTROMS.
Position (543, 1203), (548, 631), (634, 772), (775, 1143), (1144, 1197)
Primary structure ('_': anchors) _GACU_-_GA_-_UU_-__-_CGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 21
3 5 6
4 8 9
5 11 12
6 19 20
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 2 20 O2'/Watson-Crick ?
3 3 11 O2'/Watson-Crick trans y
4 5 9 O2'/Watson-Crick ?
5 6 7 Watson-Crick/Watson-Crick cis
6 10 11 Watson-Crick/Watson-Crick cis
7 14 15 Watson-Crick/Watson-Crick cis
8 16 17 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters