Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-0-20-10-Multiloop pdb1njm10.m1756-1892
Source: [PDB-id:chain] 1njm:0 (&rarr PDB)
Source: Information THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH A TRNA ACCEPTOR STEM MIMIC (ASM) AND THE ANTIBIOTIC SPARSOMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.60 ANGSTROMS.
Position (1759, 1889), (1761, 1822), (1823, 1841), (1862, 1878)
Primary structure ('_': anchors) _U_-__-_CUAAGGUAGCGAAAUUCCUU_-_CUGCACGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 5 11 →
2 9 10 ↑
3 14 15 ↑
4 14 36 →
5 15 16 ↑
6 17 29 &larr
7 18 22 ↓
8 18 27 ↑
9 23 24 ↑
10 28 29 ↑
11 31 34 ↑
12 34 35 ↑
13 37 39 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 36 Watson-Crick/O2' ?
2 1 39 Watson-Crick/Watson-Crick cis
3 2 37 Hoogsteen/Watson-Crick cis y
4 3 4 Watson-Crick/Watson-Crick cis
5 3 37 O2'/Hoogsteen ?
6 4 36 O2'/Bifurcated ?
7 5 6 Watson-Crick/Watson-Crick cis
8 8 9 Hoogsteen/O2' ?
9 13 36 Hoogsteen/Watson-Crick trans
10 14 35 Sugar/Hoogsteen trans
11 15 34 Watson-Crick/Watson-Crick cis
12 16 31 Watson-Crick/Watson-Crick cis
13 17 30 O2'/Bifurcated ?
14 19 21 O2'/Hoogsteen ?
15 22 24 Bifurcated/O2' ?
16 22 32 Bifurcated/O2' ?
17 27 28 Watson-Crick/Watson-Crick cis y
18 28 29 Bifurcated/O2' ?
19 36 39 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters