Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-1-Internal Loop pdb1n8r1A.n1398-1406
Source: [PDB-id:chain] 1n8r:A (&rarr PDB)
Source: Information STRUCTURE OF LARGE RIBOSOMAL SUBUNIT IN COMPLEX WITH VIRGINIAMYCIN M
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.00 ANGSTROMS.
Position (1394, 1408), (1398, 1406)
Primary structure ('_': anchors) _CAC_-_G_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 7: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 6 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/Watson-Crick cis y
3 2 6 Hoogsteen/Watson-Crick trans
4 4 8 O2'/Watson-Crick cis y
5 5 6 Watson-Crick/Watson-Crick cis
6 7 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters