Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-2-Internal Loop pdb1n66FA.n7-16
Source: [PDB-id:chain] 1n66:A (&rarr PDB)
Source: Information STRUCTURE OF THE PYRIMIDINE-RICH INTERNAL LOOP IN THE Y- DOMAIN OF POLIOVIRUS 3'UTR
Source: Compound INTERNAL LOOP IN THE Y-DOMAIN OF POLIOVIRUS
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (4, 19), (7, 16)
Primary structure ('_': anchors) _UU_-_CU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 6
2 3 4
3 5 6
4 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 7 Watson-Crick/Watson-Crick cis y
3 3 6 Watson-Crick/Watson-Crick cis
4 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters