Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1n36FA.n1408-1443
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.65 ANGSTROMS.
Position (1409, 1442), (1417, 1435)
Primary structure ('_': anchors) _CGCCGA_-_GAAGUCG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 15 →
3 3 4 ↑
4 3 16 &larr
5 4 5 ↑
6 5 6 ↑
7 6 7 ↑
8 6 10 →
9 7 8 ↑
10 9 10 ↑
11 12 13 ↑
12 13 14 ↑
13 14 15 ↑
14 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Bifurcated/O2' trans y
3 3 15 O2'/Bifurcated ?
4 4 13 Watson-Crick/Watson-Crick cis y
5 6 11 Watson-Crick/Hoogsteen cis y
6 8 9 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters