Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-6-Internal Loop pdb1n36FA.n1392-1459
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.65 ANGSTROMS.
Position (1394, 1457), (1401, 1450)
Primary structure ('_': anchors) _CCGUGA_-_GAGCGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 14 →
3 3 4 ↑
4 3 15 &larr
5 4 5 ↑
6 5 11 →
7 9 10 ↑
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
11 15 16 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 16 Watson-Crick/Watson-Crick cis
2 2 3 Hoogsteen/O2' ?
3 3 13 Sugar/Hoogsteen cis y
4 3 14 O2'/Bifurcated ?
5 6 10 Watson-Crick/Watson-Crick cis
6 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters