Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb1n36FA.n1029-1184
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.65 ANGSTROMS.
Position (1030, 1183), (1036, 1176)
Primary structure ('_': anchors) _CAGCAU_-_GCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 12
2 2 3
3 3 4
4 3 10
5 4 5
6 7 15 &larr
7 8 14 &larr
8 9 10
9 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 12 Sugar/Watson-Crick trans y
3 3 11 Watson-Crick/Watson-Crick cis
4 5 9 Hoogsteen/Sugar trans y
5 8 9 Watson-Crick/Watson-Crick cis
6 10 14 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters