Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-4-Internal Loop pdb1n361A.n285-294
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.65 ANGSTROMS.
Position (283, 299), (285, 294)
Primary structure ('_': anchors) _G_-_UGGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 6 →
3 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 6 Bifurcated/O2' trans y
3 1 9 Watson-Crick/Watson-Crick cis
4 3 4 Watson-Crick/Watson-Crick cis
5 3 5 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters