Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-8-Internal Loop pdb1n361A.n134-168
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.65 ANGSTROMS.
Position (135, 167), (143, 158)
Primary structure ('_': anchors) _GGGACAA_-_CUAAUCCC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C4'-exo, 15: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 4 17 →
6 5 6 ↑
7 7 8 ↑
8 8 9 ↑
9 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 4 16 Watson-Crick/Watson-Crick cis
3 5 14 Hoogsteen/Watson-Crick trans y
4 6 13 Hoogsteen/Watson-Crick trans y
5 7 12 Watson-Crick/Hoogsteen trans y
6 9 10 Watson-Crick/Watson-Crick cis y
7 15 16 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters