Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb1n361A.n1029-1184
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.65 ANGSTROMS.
Position (1030, 1183), (1036, 1176)
Primary structure ('_': anchors) _GCAUG_-_CAGCAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 9 &larr
2 2 8 &larr
3 4 5 ↑
4 4 15 →
5 6 7 ↑
6 6 13 →
7 11 12 ↑
8 12 13 ↑
9 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 6 Hoogsteen/Watson-Crick cis
3 4 14 Sugar/Watson-Crick trans y
4 5 13 Watson-Crick/Watson-Crick cis
5 7 8 Watson-Crick/Watson-Crick cis
6 7 11 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters