Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-6-1-1-6-Multiloop pdb1n361A.m48-350
Source: [PDB-id:chain] 1n36:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CRYSTALLOGRAPHICALLY DISORDERED CODON AND NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE SECOND CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.65 ANGSTROMS.
Position (50, 348), (57, 95), (102, 305), (307, 328), (330, 341)
Primary structure ('_': anchors) _AUGCAA_-_GGACGG_-_A_-_A_-_GCAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C1'-exo, 11: C4'-exo, 12: C2'-endo, 18: C2'-endo, 26: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		11: syn, 12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 6 27 →
4 8 10 →
5 9 10 ↑
6 13 14 ↑
7 14 15 ↑
8 16 18 →
9 19 21 →
10 19 24 ↓
11 21 22 ↑
12 27 28 ↑
13 28 29 ↑
14 29 30 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 24 Bifurcated/O2' ?
2 1 30 Watson-Crick/Watson-Crick cis y
3 7 10 O2'/Watson-Crick trans y
4 7 14 Bifurcated/O2' ?
5 8 9 Watson-Crick/Watson-Crick cis y
6 15 18 Watson-Crick/Watson-Crick cis y
7 16 17 Watson-Crick/Watson-Crick cis
8 16 26 O2'/Sugar cis y
9 17 26 Watson-Crick/O2' ?
10 19 20 Watson-Crick/Watson-Crick cis
11 21 24 Watson-Crick/Watson-Crick cis y
12 22 23 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters