Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb1n34FA.n1415-1437
Source: [PDB-id:chain] 1n34:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN THE PRESENCE OF CODON AND CRYSTALLOGRAPHICALLY DISORDERED NEAR-COGNATE TRANSFER RNA ANTICODON STEM-LOOP MISMATCHED AT THE FIRST CODON POSITION
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.80 ANGSTROMS.
Position (1416, 1436), (1423, 1432)
Primary structure ('_': anchors) _AGG_-_CCGGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 4 6
6 7 9
7 10 11
8 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis y
2 3 11 Watson-Crick/Watson-Crick cis
3 4 10 Bifurcated/O2' trans y
4 5 6 Watson-Crick/Watson-Crick cis
5 9 10 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters