Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-7-Internal Loop pdb1mnx1A.n12-31
Source: [PDB-id:chain] 1mnx:A (&rarr PDB)
Source: Information THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS.
Source: Compound LOOP E FROM 5S RRNA
Source: Resolution NOT APPLICABLE.
Position (4, 39), (12, 31)
Primary structure ('_': anchors) _GACGAUA_-_AAAAAUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 3 17 →
4 4 5 ↑
5 5 6 ↑
6 6 7 ↑
7 8 12 →
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
11 14 15 ↑
12 15 16 ↑
13 16 17 ↑
14 17 18 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis
2 2 17 Hoogsteen/Sugar trans
3 3 16 Watson-Crick/Hoogsteen trans
4 4 15 Watson-Crick/Hoogsteen trans y
5 5 14 Watson-Crick/Watson-Crick cis y
6 6 13 Hoogsteen/Watson-Crick trans y
7 7 12 Hoogsteen/Watson-Crick trans
8 8 11 O2'/Bifurcated ?
9 9 10 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters