Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb1mfq1A.n18-57
Source: [PDB-id:chain] 1mfq:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE ANALYSIS OF A TERNARY S-DOMAIN COMPLEX OF HUMAN SIGNAL RECOGNITION PARTICLE
Source: Compound 7S RNA OF HUMAN SRP
Source: Resolution 3.10 ANGSTROMS.
Position (19, 56), (24, 51)
Primary structure ('_': anchors) _AUAU_-_AGGU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C2'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 4 10
5 6 8
6 8 9
7 9 10
8 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 3 10 Watson-Crick/Watson-Crick cis
3 4 9 Watson-Crick/Watson-Crick cis y
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters