Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb1m901A.i2458-2465
Source: [PDB-id:chain] 1m90:A (&rarr PDB)
Source: Information CO-CRYSTAL STRUCTURE OF CCA-PHE-CAPROIC ACID-BIOTIN AND SPARSOMYCIN BOUND TO THE 50S RIBOSOMAL SUBUNIT
Source: Compound 23S RRNA
Source: Resolution 2.80 ANGSTROMS.
Position (2458, 2465)
Primary structure ('_': anchors) _AUUAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
7: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 7 Hoogsteen/Watson-Crick trans
2 4 6 O2'/Hoogsteen ?
3 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters