Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb1m5o1B.i19-27
Source: [PDB-id:chain] 1m5o:B (&rarr PDB)
Source: Information TRANSITION STATE STABILIZATION BY A CATALYTIC RNA
Source: Compound RNA HAIRPIN RIBOZYME
Source: Resolution 2.20 ANGSTROMS.
Position (19, 27)
Primary structure ('_': anchors) _AGAAACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 4 5
4 5 6
5 6 7
6 7 8
7 8 9
Tertiary structure: Base-pairs
(anchor pairs)
None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters