Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1lux1A.e5-13
Source: [PDB-id:chain] 1lux:A (&rarr PDB)
Source: Information NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)
Source: Compound 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)
Source: Resolution NOT APPLICABLE.
Position (5, 13)
Primary structure ('_': anchors) _CUGAAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-endo, 5: C4'-exo, 6: C4'-exo, 7: C2'-endo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 6 →
4 6 7 ↑
5 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 3 4 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters