Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1lngFB.n59-84
Source: [PDB-id:chain] 1lng:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII
Source: Compound 7S.S SRP RNA
FLIPPED INTERNAL
Source: Resolution 2.30 ANGSTROMS.
Position (61, 82), (67, 76)
Primary structure ('_': anchors) _AGCAA_-_CCAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 3 11 →
5 5 6 ↑
6 5 12 &larr
7 6 7 ↑
8 8 9 ↑
9 9 10 ↑
10 10 11 ↑
11 12 13 ↑
12 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 13 Watson-Crick/Watson-Crick trans y
3 3 12 Bifurcated/O2' trans y
4 4 11 Watson-Crick/Hoogsteen trans
5 4 12 O2'/Bifurcated ?
6 5 10 Sugar/Hoogsteen trans y
7 5 11 Bifurcated/O2' ?
8 6 9 Watson-Crick/Watson-Crick cis
9 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters