Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-4-Internal Loop pdb1l9aFB.n85-94
Source: [PDB-id:chain] 1l9a:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA
Source: Compound SIGNAL RECOGNITION PARTICLE RNA S DOMAIN
FLIPPED INTERNAL
Source: Resolution 2.90 ANGSTROMS.
Position (80, 99), (85, 94)
Primary structure ('_': anchors) _AGCA_-_CAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 10
4 3 4
5 4 5
6 5 6
7 7 8
8 8 9
9 9 10
10 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Watson-Crick/Watson-Crick cis y
3 3 10 Watson-Crick/Hoogsteen trans
4 4 9 Watson-Crick/Bifurcated trans
5 5 8 Watson-Crick/Watson-Crick cis
6 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters