Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-1-Internal Loop pdb1l8vFA.n34-80
Source: [PDB-id:chain] 1l8v:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A MUTANT (C109G,G212C) P4-P6 DOMAIN OF THE GROUP I INTRON FROM TETRAHYMENA THERMOPHILIA
Source: Compound P4-P6 RNA RIBOZYME DOMAIN
FLIPPED INTERNAL
Source: Resolution 2.80 ANGSTROMS.
Position (32, 87), (34, 80)
Primary structure ('_': anchors) _AAUAAG_-_U_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 3: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3
2 3 8 &larr
3 3 9
4 6 7
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 10 Hoogsteen/Watson-Crick cis
3 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters