Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-2-Internal Loop pdb1l8v1B.n5-111
Source: [PDB-id:chain] 1l8v:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A MUTANT (C109G,G212C) P4-P6 DOMAIN OF THE GROUP I INTRON FROM TETRAHYMENA THERMOPHILIA
Source: Compound P4-P6 RNA RIBOZYME DOMAIN
Source: Resolution 2.80 ANGSTROMS.
Position (10, 106), (14, 103)
Primary structure ('_': anchors) _AAA_-_AA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 7 &larr
3 3 4 ↑
4 3 8 →
5 4 5 ↑
6 6 7 ↑
7 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Hoogsteen/Sugar trans
3 3 7 Sugar/Hoogsteen trans y
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters