Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Segment pdb1kqs10.i425-435
Source: [PDB-id:chain] 1kqs:0 (&rarr PDB)
Source: Information THE HALOARCULA MARISMORTUI 50S COMPLEXED WITH A PRETRANSLOCATIONAL INTERMEDIATE IN PROTEIN SYNTHESIS
Source: Compound 23S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (425, 435)
Primary structure ('_': anchors) _UAAACACAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 5
4 7 8
5 8 9
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 9 10 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters