Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Segment pdb1kqs10.i272-288
Source: [PDB-id:chain] 1kqs:0 (&rarr PDB)
Source: Information THE HALOARCULA MARISMORTUI 50S COMPLEXED WITH A PRETRANSLOCATIONAL INTERMEDIATE IN PROTEIN SYNTHESIS
Source: Compound 23S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (272, 288)
Primary structure ('_': anchors) _UCUCAUCAGCCGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 6 7 ↑
4 7 8 ↑
5 8 9 ↑
6 9 10 ↑
7 10 11 ↑
8 11 12 ↑
9 12 13 ↑
10 14 15 ↑
11 15 16 ↑
12 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs) 		None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters