Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1kos1A.e5-13
Source: [PDB-id:chain] 1kos:A (&rarr PDB)
Source: Information SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT ITS NATURALLY OCCURRING POSITION
Source: Compound 5'-R(*CP*UP*GP*UP*GP*(5MU)P*UP*CP*GP*AP*UP*(CH)
Source: Resolution NOT APPLICABLE.
Position (5, 13)
Primary structure ('_': anchors) _UUCGAUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C3'-exo, 2: C4'-exo, 3: C2'-endo, 4: C3'-exo, 5: C3'-exo, 6: C1'-exo, 8: C2'-endo, 9: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 &larr
2 6 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Hoogsteen/O2' ?
2 1 9 Watson-Crick/Watson-Crick cis
3 3 4 Watson-Crick/O2' ?
4 8 9 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters