Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-1-Internal Loop pdb1kogFI.n8-28
Source: [PDB-id:chain] 1kog:I (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF E. COLI THREONYL-TRNA SYNTHETASE INTERACTING WITH THE ESSENTIAL DOMAIN OF ITS MRNA OPERATOR
Source: Compound THREONYL-TRNA SYNTHETASE MRNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (6, 32), (8, 28)
Primary structure ('_': anchors) _CAC_-_U_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 6 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/O2' cis y
3 4 8 Watson-Crick/Hoogsteen trans
4 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters